Page 4 - LifeScience Multi-Omics Analysis Package
P. 4

C146-E385A



                                               Tools for Data Analysis


            The Multi-omics Analysis Package is based on software tools (called gadgets) that have been released on the   Multi-omics Analysis Package
            GARUDA platform - an open research platform, developed by the GARUDA Alliance led by The Systems Biology
            Institute, Japan (SBI).
                                                                                                                                         LC/MS, GC/MS Data Analysis Software
                                                                                                                                         Multi-omics Analysis Package
                                                Data Analysis Tools Used in the Multi-omics Analysis Package

                                                        ■Volcano Plot
                                                        A tool that combines a t-test (statistically signi cant difference) and a fold-change (Example:
                                                        Difference in mean value such as 2 times or 1/2) to visualize the differences between the two
                                                        groups. The Volcano Plot gadget developed by Shimadzu is included in the package.
                                                        ■VANTED
                                                        Tool maintained at University of Konstanz, Germany, for visualization and analysis of networks
                                                        across different data sets. (GARUDA support was developed at Monash University)

                                                        ■Cytoscape
                                                        Bioinformatics tool developed by the Cytoscape Consortium, used to visualize metabolic pathways,
                                                        to integrate gene expression pro les with related data, and so on. It is especially useful for
            http://www.garuda-alliance.org/             analyzing networks and visualizing correlations.



                                           Method Packages for Omics


                                                                       ■GC/MS, GC-MS/MS Method Package for Metabolites
                                                                        Description                  Flyer code
                                                                        Smart Metabolites Database ™  C146-E277
                                                                       ■LC/MS/MS Method Packages
                                                                        Description                  Flyer code
                                                                        Primary Metabolites          C146-E227
                                                                        Short Chain Fatty Acid       C146-E355
                                                                        Lipid Mediators              C146-E381
                                                                        D/L Amino Acids              C146-E336
                                                                        Cell Culture Pro ling        C146-E408
                                                                       ■LC/MS/MS MRM Library
                                                                        Description                  Flyer code
                                                                        Metabolic Enzymes in Yeast   C146-E275
                                                                        Phospholipid Pro ling        C146-E314














            Smart Metabolites Database is a trademark of Shimadzu Corporation.
            GARUDA is a trademark of The Systems Biology Institute.






                                               For Research Use Only. Not for use in diagnostic procedures.
                                               This publication may contain references to products that are not available in your country. Please contact us to check the availability of these
                                               products in your country.
                                               Company names, products/service names and logos used in this publication are trademarks and trade names of Shimadzu Corporation, its
                                               subsidiaries or its affiliates, whether or not they are used with trademark symbol “TM” or “®”.
                                               Third-party trademarks and trade names may be used in this publication to refer to either the entities or their products/services, whether or not
                                               they are used with trademark symbol “TM” or “®”.
                                               Shimadzu disclaims any proprietary interest in trademarks and trade names other than its own.
       www.shimadzu.com/an/                    The contents of this publication are provided to you “as is” without warranty of any kind, and are subject to change without notice. Shimadzu
                                               does not assume any responsibility or liability for any damage, whether direct or indirect, relating to the use of this publication.
                                                                                                   © Shimadzu Corporation, 2020
                                                                                          First Edition: March 2019   3655-07025-ODPIT
   1   2   3   4